Septerna
Healthcare & Life SciencesDirect Greenhouse career site

Associate Director, Process Chemistry

Pay
$200,000 – $220,000 per year
Location
South San Francisco, CA · On-site
Job type
Full-time
Level
Director
Experience
7+ years
Education
Bachelor's degree
Listed
30 days ago

Skills & highlights for this role

  • process development
  • scale-up
  • UPLC/HPLC
  • GMP
  • regulatory CMC documentation

Also useful

  • NMR
  • XRPD
  • ICH guidelines

The Role

We are seeking an experienced and highly motivated Associate Director of Process Chemistry to manage and drive drug substance process development and delivery activities across our small molecule drug discovery and development programs.

This individual will fill a critical role as a subject matter expert (SME) and will contribute to the strategic direction, technical management, and operational execution for CMC development and manufacturing activities.

This position is instrumental in collaborating with and managing a network of consultants and Contract Development and Manufacturing Organization (CDMO) partners to enable our efforts to discover and develop small molecule therapeutics from preclinical through commercial.

Responsibilities

  • Act as an SME for Process Chemistry in the support of drug substance development, including process chemistry, solid form selection, crystallization development, and GMP manufacture.
  • Lead process development efforts, including route scouting, process optimization, and scale-up activities, proactively implementing mitigation strategies to ensure robust, cost-effective, safe, scalable, and phase-appropriate manufacturing processes.
  • Contribute to CMC control strategies defining starting materials, impurity control strategies, and the specifications for starting materials, intermediates, and drug substance in alignment with industry standards and regulatory expectations.
  • Support the evaluation, selection, technology transfer, and management of CDMOs to perform route and process development, and GMP manufacture.
  • Contribute to the development of CMC strategies to meet program and project development targets, ensure timely and efficient delivery of high-quality products, and facilitate regulatory approvals.
  • Collaborate closely within the CMC function with Analytical Chemistry and Formulation Development, and across cross-functional teams including Quality, Medicinal Chemistry, DMPK, Toxicology, Project Management, Development Sciences, and Clinical Pharmacology to achieve project goals.
  • Manage multiple priorities in a fast-paced, dynamic environment and enact quick problem solving to ensure on-time supply of drug to support non-GLP toxicology studies, IND-enabling activities, and clinical trials across multiple programs.
  • Support development of the Quality system to ensure product quality and data integrity, including authoring and reviewing standard operating procedures, guidelines, and work instructions.
  • Author and review process development reports, batch records, campaign reports, change controls, corrective and preventative actions, deviations, and investigations.
  • Write and review CMC sections of regulatory documents and submissions (IMPD, IB, IND, NDA, etc.) and the supporting technical documents, and remain current on Health Authority guidance and expectations.

Qualifications

  • A PhD, MS, or BS degree in organic chemistry or related field with a minimum of 7 years, 10 years, or 12 years, respectively, of relevant industry experience in small molecule drug substance development with demonstrated increasing responsibilities within process chemistry.
  • Exhibited track record of success in delivering timely execution of drug substance activities ranging from non-GLP and IND-enabling material supplies, through GMP clinical trial supplies and commercialization.
  • Demonstrated expertise in small molecule synthetic route evaluation, process development, scale-up and manufacturing, and phase-appropriate control strategy and specification development.
  • Experience with analytical techniques to support small molecule process development, with proficiency in UPLC/HPLC, GC, MS, NMR, and solid-state characterization techniques such as particle size distribution and XRPD.
  • Strong understanding of Quality systems including SOPs, manufacturing record review, batch release and disposition, Good Documentation Practices, cGMP data traceability, Deviations, and Change Management.
  • Demonstrated knowledge and application of current industry and compendial standards and regulatory authority guidance and expectations, including ICH, FDA, MHRA, and EMA guidelines and USP-NF, Ph. Eur, BP, and JP compendia.
  • Proven ability to manage and collaborate with external partners, including consultants and CDMOs.
  • Excellent interpersonal and communication skills (written and oral) with the ability to effectively prepare high-quality technical documentation and concisely present data to peers, management, and external groups.
  • Exhibited strong organizational and critical thinking skills with an attention to detail and data integrity enabling sound, technically driven decision making.
  • Able to travel domestically and internationally as needed, up to 20% of the time.

Pay and benefits

The anticipated salary range for candidates who will work in South San Francisco, CA is $200,000 - $220,000. Individual pay may vary based on additional factors, including, and without limitation, job-related skills, experience, work location and relevant education or training. Septerna's compensation package also includes benefits, stock options, and annual target bonus for full-time positions.

Note to Employment Agencies: Please do not forward any agency resumes. The company will not be responsible for any fees related to resumes that are unsolicited.

Note to Employment Agencies: Please do not forward any agency resumes. The company will not be responsible for any fees related to resumes that are unsolicited. California Consumer Privacy Act Privacy Notice For Job Applicants. If you are a California resident, click here for our CCPA Notice.

About Septerna

Septerna is a biotechnology company based in South San Francisco, CA on a mission to develop life-changing medicines for patients with the vision to become the industry-leading G protein-coupled receptor (GPCR)-focused drug discovery company. The company's Native Complex Platform™ recapitulates GPCRs with their native structure, function, and dynamics outside of the cellular context.

This approach enables novel access to modern structural and screening technologies used in industrial-scale drug discovery for the entire class of GPCRs. Septerna has an emerging pipeline of GPCR-targeted small molecule programs, many in the Endocrinology space, with potential for growth to target many GPCRs that have been undruggable and unexploited to date.

We are excited to expand our multidisciplinary team of individuals focused on creating revolutionary medicines to address the unmet needs of patients. At Septerna we strive to embrace diversity of thought, expertise, and background through collaboration.

To join our ambitious team, be prepared to bring your real self to work every day; grow and learn from a talented team of drug hunters, scientists, and business professionals; and contribute your passion, creativity, and energy to accomplish our mission. We share a fearless pursuit of ground-breaking innovations and cultivate an environment where our employees succeed by learning from each other and working as a team.

We are committed to the development of meaningful therapeutics for patients with indications of high unmet need. This is a tremendous opportunity to work with talented individuals on the frontlines of therapeutic discovery and development. You will directly help move therapies through preclinical research, positioning them for success in the clinic. The successful candidate will add their passion, unique talents, and expertise to a dynamic team motivated to discover new disease-modifying therapeutics for patients in a fast-paced environment.

Read the original posting

From Septerna's careers page, first listed on Rolev.ai on October 10, 2026. Rolev.ai is not the employer.

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Common questions

What is the salary for the Associate Director, Process Chemistry role at Septerna?

The Associate Director, Process Chemistry posting at Septerna states compensation of $200,000 – $220,000 per year. It is listed as a full-time position. Final pay may depend on location, experience, and interview evaluation on Septerna's official career site.

Where is the Associate Director, Process Chemistry job at Septerna located?

This Associate Director, Process Chemistry position at Septerna is located in South San Francisco, CA (On-site). Always check Septerna's application page for specific state eligibility or relocation policies.

What qualifications are required for Associate Director, Process Chemistry at Septerna?

For the Associate Director, Process Chemistry role, Septerna highlights 7+ years of relevant experience; a bachelor's degree; experience with process development, scale-up, UPLC/HPLC, GMP, regulatory CMC documentation. Rolev.ai can score your existing resume against these requirements and show any skill gaps before you apply.

How do I apply for the Associate Director, Process Chemistry position at Septerna?

This listing links directly to Septerna's Greenhouse application page. You can apply directly on Septerna's site, or use Rolev.ai to check your resume fit, generate a zero-hallucination tailored resume and cover letter for this posting, and autofill the Greenhouse application form in 1 click with the Rolev.ai Chrome extension. You always review the form and press Submit yourself.